IL_3J6Y_150

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCUGA*UGCAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|C|1562
3J6Y|1|2S|C|1563
3J6Y|1|2S|U|1564
3J6Y|1|2S|G|1565
3J6Y|1|2S|A|1566
*
3J6Y|1|2S|U|1572
3J6Y|1|2S|G|1573
3J6Y|1|2S|C|1574
3J6Y|1|2S|A|1575
3J6Y|1|2S|G|1576
3J6Y|1|2S|G|1577

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 65

60S ribosomal protein L25

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA

Chain L8

60S ribosomal protein L8