IL_3J6Y_168
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UCGGGUAGUG*CGCUUGCUACAACGA
- Length
- 25 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|1953, 3J6Y|1|2S|G|1954, 3J6Y|1|2S|A|2093, 3J6Y|1|2S|C|2094
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|U|1950
3J6Y|1|2S|C|1951
3J6Y|1|2S|G|1952
3J6Y|1|2S|G|1953
3J6Y|1|2S|G|1954
3J6Y|1|2S|U|1955
3J6Y|1|2S|A|1956
3J6Y|1|2S|G|1957
3J6Y|1|2S|U|1958
3J6Y|1|2S|G|1959
*
3J6Y|1|2S|C|2078
3J6Y|1|2S|G|2079
3J6Y|1|2S|C|2080
3J6Y|1|2S|U|2081
3J6Y|1|2S|U|2082
3J6Y|1|2S|G|2083
3J6Y|1|2S|C|2084
3J6Y|1|2S|U|2085
3J6Y|1|2S|A|2086
3J6Y|1|2S|C|2087
3J6Y|1|2S|A|2088
3J6Y|1|2S|A|2093
3J6Y|1|2S|C|2094
3J6Y|1|2S|G|2095
3J6Y|1|2S|A|2096
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 59
- 60S ribosomal protein L19
Coloring options: