IL_3J6Y_169

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UCAGACGCA*UGUUGUAGA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|U|1970
3J6Y|1|2S|C|1971
3J6Y|1|2S|A|1972
3J6Y|1|2S|G|1973
3J6Y|1|2S|A|1974
3J6Y|1|2S|C|1975
3J6Y|1|2S|G|1976
3J6Y|1|2S|C|1977
3J6Y|1|2S|A|1978
*
3J6Y|1|2S|U|2041
3J6Y|1|2S|G|2042
3J6Y|1|2S|U|2043
3J6Y|1|2S|U|2044
3J6Y|1|2S|G|2045
3J6Y|1|2S|U|2046
3J6Y|1|2S|A|2047
3J6Y|1|2S|G|2048
3J6Y|1|2S|A|2049

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 78

60S ribosomal protein L38