IL_3J6Y_174

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

3J6Y|1|2S|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|C|2204
3J6Y|1|2S|U|2205
3J6Y|1|2S|G|2206
3J6Y|1|2S|A|2207
3J6Y|1|2S|A|2208
3J6Y|1|2S|U|2209
3J6Y|1|2S|G|2210
*
3J6Y|1|2S|C|2235
3J6Y|1|2S|G|2236
3J6Y|1|2S|C|2237
3J6Y|1|2S|G|2238

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain L2

60S ribosomal protein L2