IL_3J6Y_176

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_176 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1648

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

3J6Y|1|2S|G|2276
3J6Y|1|2S|C|2277
*
3J6Y|1|2S|G|2307
3J6Y|1|2S|C|2308
3J6Y|1|2S|A|2309
3J6Y|1|2S|U|2310

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 81

60S ribosomal protein L41