IL_3J6Y_182

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

3J6Y|1|2S|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_182 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.2124

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

3J6Y|1|2S|U|2423
3J6Y|1|2S|A|2424
3J6Y|1|2S|G|2425
*
3J6Y|1|2S|U|2604
3J6Y|1|2S|G|2605
3J6Y|1|2S|G|2606
3J6Y|1|2S|G|2607

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 55

60S ribosomal protein L15

Chain 82

60S ribosomal protein L42

Chain L2

60S ribosomal protein L2