IL_3J6Y_185

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGGGUGUAGAAUAAG*CUACCU

Length

21 nucleotides

Bulged bases

3J6Y|1|2S|U|2453, 3J6Y|1|2S|A|2458, 3J6Y|1|2S|U|2460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|A|2449
3J6Y|1|2S|G|2450
3J6Y|1|2S|G|2451
3J6Y|1|2S|G|2452
3J6Y|1|2S|U|2453
3J6Y|1|2S|G|2454
3J6Y|1|2S|U|2455
3J6Y|1|2S|A|2456
3J6Y|1|2S|G|2457
3J6Y|1|2S|A|2458
3J6Y|1|2S|A|2459
3J6Y|1|2S|U|2460
3J6Y|1|2S|A|2461
3J6Y|1|2S|A|2462
3J6Y|1|2S|G|2463
*
3J6Y|1|2S|C|2492
3J6Y|1|2S|U|2493
3J6Y|1|2S|A|2494
3J6Y|1|2S|C|2495
3J6Y|1|2S|C|2496
3J6Y|1|2S|U|2497

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain L1

60S ribosomal protein L1