IL_3J6Y_193

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_193 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.2631

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

3J6Y|1|2S|C|2876
3J6Y|1|2S|G|2877
3J6Y|1|2S|G|2878
*
3J6Y|1|2S|C|2948
3J6Y|1|2S|U|2949
3J6Y|1|2S|G|2950
3J6Y|1|2S|G|2951

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3