IL_3J6Y_210

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

3J6Y|1|2S|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_210 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.2068

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J6Y|1|2S|C|3193
3J6Y|1|2S|C|3194
*
3J6Y|1|2S|G|3197
3J6Y|1|2S|U|3198
3J6Y|1|2S|G|3199

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 54

60S ribosomal protein L14

Chain 56

60S ribosomal protein L16

Chain L9

60S ribosomal protein L9