IL_3J6Y_224

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CC*GUAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_224 not in the Motif Atlas

Geometric match to IL_1U6B_007

Geometric discrepancy: 0.3739

The information below is about IL_1U6B_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

3J6Y|1|5S|C|28
3J6Y|1|5S|C|29
*
3J6Y|1|5S|G|49
3J6Y|1|5S|U|50
3J6Y|1|5S|A|51
3J6Y|1|5S|G|52

Current chains

Chain 5S

5S ribosomal RNA

Nearby chains

Chain 51

60S ribosomal protein L11

Chain L5

60S ribosomal protein L5