IL_3J6Y_231
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 3J6Y|1|1S|G|322
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_231 not in the Motif Atlas
- Homologous match to IL_8C3A_411
- Geometric discrepancy: 0.4266
- The information below is about IL_8C3A_411
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71854.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|1S|U|318
3J6Y|1|1S|U|319
3J6Y|1|1S|U|320
3J6Y|1|1S|C|321
3J6Y|1|1S|G|322
3J6Y|1|1S|A|323
*
3J6Y|1|1S|U|345
3J6Y|1|1S|G|346
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 59
- 60S ribosomal protein L19
- Chain S8
- 40S ribosomal protein S8
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