IL_3J6Y_233

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

3J6Y|1|1S|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_233 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3746

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J6Y|1|1S|G|868
3J6Y|1|1S|A|869
*
3J6Y|1|1S|U|958
3J6Y|1|1S|U|959
3J6Y|1|1S|U|960

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 13

40S ribosomal protein S13

Chain 27

40S ribosomal protein S27