IL_3J6Y_236
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_236 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.2203
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|1S|G|1480
3J6Y|1|1S|C|1481
3J6Y|1|1S|C|1482
3J6Y|1|1S|A|1483
3J6Y|1|1S|G|1484
3J6Y|1|1S|C|1485
3J6Y|1|1S|G|1486
3J6Y|1|1S|A|1487
*
3J6Y|1|1S|U|1519
3J6Y|1|1S|U|1520
3J6Y|1|1S|G|1521
3J6Y|1|1S|U|1522
3J6Y|1|1S|G|1523
3J6Y|1|1S|A|1524
3J6Y|1|1S|A|1525
3J6Y|1|1S|A|1526
3J6Y|1|1S|C|1527
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 19
- 40S ribosomal protein S19
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain S3
- 40S ribosomal protein S3
- Chain S5
- 40S ribosomal protein S5
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