IL_3J6Y_239

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_239 not in the Motif Atlas

Geometric match to IL_5TBW_501

Geometric discrepancy: 0.2445

The information below is about IL_5TBW_501

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

3J6Y|1|2S|U|177
3J6Y|1|2S|U|178
*
3J6Y|1|2S|A|238
3J6Y|1|2S|G|239
3J6Y|1|2S|U|240
3J6Y|1|2S|G|241

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 53

60S ribosomal protein L13

Chain 75

60S ribosomal protein L35

Chain 77

60S ribosomal protein L37