IL_3J6Y_240
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGAC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|338
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_240 not in the Motif Atlas
- Geometric match to IL_5M0H_001
- Geometric discrepancy: 0.2506
- The information below is about IL_5M0H_001
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
3J6Y|1|2S|A|336
3J6Y|1|2S|G|337
3J6Y|1|2S|A|338
3J6Y|1|2S|C|339
*
3J6Y|1|8S|G|25
3J6Y|1|8S|U|26
3J6Y|1|8S|U|27
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 66
- 60S ribosomal protein L26
- Chain L4
- 60S ribosomal protein L4
Coloring options: