IL_3J6Y_250

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CAUAGA*UUUAUAG

Length

13 nucleotides

Bulged bases

3J6Y|1|2S|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|C|2444
3J6Y|1|2S|A|2445
3J6Y|1|2S|U|2446
3J6Y|1|2S|A|2447
3J6Y|1|2S|G|2448
3J6Y|1|2S|A|2449
*
3J6Y|1|2S|U|2497
3J6Y|1|2S|U|2498
3J6Y|1|2S|U|2499
3J6Y|1|2S|A|2500
3J6Y|1|2S|U|2501
3J6Y|1|2S|A|2502
3J6Y|1|2S|G|2503

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L36

Chain L1

60S ribosomal protein L1

Chain L8

60S ribosomal protein L8