3D structure

PDB id
3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.1 Å

Loop

Sequence
CAC*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J6Y_254 not in the Motif Atlas
Homologous match to IL_8C3A_130
Geometric discrepancy: 0.3838
The information below is about IL_8C3A_130
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

3J6Y|1|2S|C|3164
3J6Y|1|2S|A|3165
3J6Y|1|2S|C|3166
*
3J6Y|1|2S|G|3284
3J6Y|1|2S|C|3285
3J6Y|1|2S|G|3286

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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