IL_3J6Y_256
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 3J6Y|1|5S|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_256 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.2078
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3J6Y|1|5S|A|72
3J6Y|1|5S|C|73
3J6Y|1|5S|C|74
3J6Y|1|5S|G|75
3J6Y|1|5S|A|76
3J6Y|1|5S|G|77
3J6Y|1|5S|U|78
3J6Y|1|5S|A|79
3J6Y|1|5S|G|80
*
3J6Y|1|5S|C|100
3J6Y|1|5S|G|101
3J6Y|1|5S|A|102
3J6Y|1|5S|A|103
3J6Y|1|5S|A|104
3J6Y|1|5S|C|105
3J6Y|1|5S|U|106
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 50
- 60S ribosomal protein L10
- Chain 60
- 60S ribosomal protein L20
- Chain 61
- 60S ribosomal protein L21
- Chain L7
- 60S ribosomal protein L7
Coloring options: