IL_3J71_002
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGAUC*GUCUG
- Length
- 11 nucleotides
- Bulged bases
- 3J71|1|5|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_002 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.3471
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3J71|1|5|C|9
3J71|1|5|A|10
3J71|1|5|G|11
3J71|1|5|A|12
3J71|1|5|U|13
3J71|1|5|C|14
*
3J71|1|8|G|143
3J71|1|8|U|144
3J71|1|8|C|145
3J71|1|8|U|146
3J71|1|8|G|147
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain G
- Ribosomal protein eL8
- Chain N
- Ribosomal protein eL15
- Chain X
- Ribosomal protein uL23
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