IL_3J71_048
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCGAAUG*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 3J71|1|5|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_048 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2929
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J71|1|5|G|1739
3J71|1|5|C|1740
3J71|1|5|G|1741
3J71|1|5|A|1742
3J71|1|5|A|1743
3J71|1|5|U|1744
3J71|1|5|G|1745
*
3J71|1|5|C|1785
3J71|1|5|A|1786
3J71|1|5|A|1787
3J71|1|5|A|1788
3J71|1|5|C|1789
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal protein uL18
- Chain I
- Ribosomal protein uL16
- Chain T
- Ribosomal protein eL21
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