IL_3J71_115
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_115 not in the Motif Atlas
- Geometric match to IL_7A0S_007
- Geometric discrepancy: 0.1964
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
3J71|1|7|G|71
3J71|1|7|U|72
3J71|1|7|U|73
3J71|1|7|A|74
3J71|1|7|G|75
3J71|1|7|U|76
3J71|1|7|A|77
3J71|1|7|C|78
*
3J71|1|7|G|98
3J71|1|7|G|99
3J71|1|7|A|100
3J71|1|7|A|101
3J71|1|7|U|102
3J71|1|7|A|103
3J71|1|7|C|104
Current chains
- Chain 7
- 5S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Ribosomal protein uL18
- Chain F
- Ribosomal protein uL30
- Chain I
- Ribosomal protein uL16
- Chain S
- Ribosomal protein eL20
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