IL_3J71_141
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J71_141 not in the Motif Atlas
- Geometric match to IL_5J7L_386
- Geometric discrepancy: 0.2177
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
3J71|1|5|G|2847
3J71|1|5|G|2848
3J71|1|5|A|2849
3J71|1|5|A|2850
3J71|1|5|G|2851
3J71|1|5|U|2852
3J71|1|5|C|2853
3J71|1|5|G|2854
3J71|1|5|G|2855
*
3J71|1|5|C|3837
3J71|1|5|U|3838
3J71|1|5|G|3839
3J71|1|5|U|3840
3J71|1|5|C|3841
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein uL3
- Chain V
- Ribosomal protein uL14
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