IL_3J73_015
3D structure
- PDB id
- 3J73 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J73_015 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.1833
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J73|1|5|G|415
3J73|1|5|U|416
3J73|1|5|G|417
3J73|1|5|A|418
3J73|1|5|A|419
3J73|1|5|A|420
3J73|1|5|C|421
*
3J73|1|8|G|13
3J73|1|8|U|14
3J73|1|8|G|15
3J73|1|8|G|16
3J73|1|8|A|17
3J73|1|8|U|18
3J73|1|8|C|19
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain P
- Ribosomal protein uL22
- Chain e
- Ribosomal protein eL32
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