IL_3J73_076

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_076 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.111

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J73|1|5|G|2889
3J73|1|5|C|2890
3J73|1|5|U|2891
*
3J73|1|5|A|3610
3J73|1|5|A|3611
3J73|1|5|C|3612

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain S2

18S ribosomal RNA

Chain SI

Ribosomal protein eS8