IL_3J73_086

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAG*UGGGG

Length

9 nucleotides

Bulged bases

3J73|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_086 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.3305

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

3J73|1|5|C|3926
3J73|1|5|U|3927
3J73|1|5|A|3928
3J73|1|5|G|3929
*
3J73|1|5|U|4181
3J73|1|5|G|4182
3J73|1|5|G|4183
3J73|1|5|G|4184
3J73|1|5|G|4185

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12

Chain N

Ribosomal protein eL15

Chain o

Ribosomal protein eL42