IL_3J73_090

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAGAGGUGUAGAAUAA*UACUCUGA

Length

25 nucleotides

Bulged bases

3J73|1|5|U|3957, 3J73|1|5|G|3958, 3J73|1|5|A|3962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J73|1|5|U|3950
3J73|1|5|G|3951
3J73|1|5|A|3952
3J73|1|5|G|3953
3J73|1|5|A|3954
3J73|1|5|G|3955
3J73|1|5|G|3956
3J73|1|5|U|3957
3J73|1|5|G|3958
3J73|1|5|U|3959
3J73|1|5|A|3960
3J73|1|5|G|3961
3J73|1|5|A|3962
3J73|1|5|A|3963
3J73|1|5|U|3964
3J73|1|5|A|3965
3J73|1|5|A|3966
*
3J73|1|5|U|4055
3J73|1|5|A|4056
3J73|1|5|C|4057
3J73|1|5|U|4058
3J73|1|5|C|4059
3J73|1|5|U|4060
3J73|1|5|G|4061
3J73|1|5|A|4062

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S6

Transfer RNA; tRNA

Chain z

Ribosomal protein uL1