IL_3J73_109

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

3J73|1|5|A|4656, 3J73|1|5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_109 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2241

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

3J73|1|5|U|4641
3J73|1|5|U|4642
*
3J73|1|5|A|4655
3J73|1|5|A|4656
3J73|1|5|U|4657
3J73|1|5|G|4658

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain d

Ribosomal protein eL31