IL_3J73_129

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_129 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.1999

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

3J73|1|S2|G|108
3J73|1|S2|U|109
3J73|1|S2|U|110
*
3J73|1|S2|G|351
3J73|1|S2|U|352
3J73|1|S2|C|353

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SI

Ribosomal protein eS8

Chain SL

Ribosomal protein uS17