IL_3J73_149

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_149 not in the Motif Atlas

Geometric match to IL_1S03_003

Geometric discrepancy: 0.2412

The information below is about IL_1S03_003

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

3J73|1|S2|A|802
3J73|1|S2|C|803
*
3J73|1|S2|G|860
3J73|1|S2|A|861
3J73|1|S2|A|862
3J73|1|S2|U|863

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SH

Ribosomal protein eS7

Chain SL

Ribosomal protein uS17

Chain SW

Ribosomal protein uS8

Chain SX

Ribosomal protein uS12