IL_3J73_169

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_169 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.2072

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J73|1|S2|U|1347
3J73|1|S2|G|1348
3J73|1|S2|G|1349
*
3J73|1|S2|C|1380
3J73|1|S2|G|1381
3J73|1|S2|A|1382

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Ribosomal protein uS2

Chain SC

Ribosomal protein uS5

Chain SR

Ribosomal protein eS17