IL_3J73_179

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_179 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2281

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

3J73|1|S2|C|1713
3J73|1|S2|U|1714
3J73|1|S2|A|1715
3J73|1|S2|C|1716
*
3J73|1|S2|G|1817
3J73|1|S2|A|1818
3J73|1|S2|A|1819
3J73|1|S2|G|1820

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

28S ribosomal RNA

Chain SX

Ribosomal protein uS12

Chain n

Ribosomal protein eL41