IL_3J73_182

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAGG*UCGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_182 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2903

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3J73|1|S2|U|1733
3J73|1|S2|G|1734
3J73|1|S2|A|1735
3J73|1|S2|G|1736
3J73|1|S2|G|1737
*
3J73|1|S2|U|1797
3J73|1|S2|C|1798
3J73|1|S2|G|1799
3J73|1|S2|A|1800
3J73|1|S2|A|1801

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8

Chain W

Ribosomal protein eL24