IL_3J73_214

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

3J73|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J73_214 not in the Motif Atlas

Geometric match to IL_4WF9_082

Geometric discrepancy: 0.2189

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

3J73|1|5|U|3927
3J73|1|5|A|3928
3J73|1|5|G|3929
*
3J73|1|5|U|4181
3J73|1|5|G|4182
3J73|1|5|G|4183
3J73|1|5|G|4184

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12

Chain N

Ribosomal protein eL15

Chain o

Ribosomal protein eL42