IL_3J74_011

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

3J74|1|5|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J74_011 not in the Motif Atlas

Geometric match to IL_4V9F_029

Geometric discrepancy: 0.2496

The information below is about IL_4V9F_029

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

3J74|1|5|G|199
3J74|1|5|U|200
3J74|1|5|C|201
*
3J74|1|5|G|214
3J74|1|5|C|215

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein uL24