IL_3J74_175
3D structure
- PDB id
- 3J74 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAGG*UCGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J74_175 not in the Motif Atlas
- Geometric match to IL_4V9F_085
- Geometric discrepancy: 0.2886
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.3
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
3J74|1|S2|U|1733
3J74|1|S2|G|1734
3J74|1|S2|A|1735
3J74|1|S2|G|1736
3J74|1|S2|G|1737
*
3J74|1|S2|U|1797
3J74|1|S2|C|1798
3J74|1|S2|G|1799
3J74|1|S2|A|1800
3J74|1|S2|A|1801
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SG
- Ribosomal protein eS6
- Chain SI
- Ribosomal protein eS8
- Chain W
- Ribosomal protein eL24
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