IL_3J74_195

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCG*CCCCCGGAGCCCCGCGGACGCUACG

Length

67 nucleotides

Bulged bases

3J74|1|5|U|2090, 3J74|1|5|A|2093, 3J74|1|5|G|2111, 3J74|1|5|G|2114, 3J74|1|5|G|2115, 3J74|1|5|C|2116, 3J74|1|5|C|2119, 3J74|1|5|G|2122, 3J74|1|5|C|2123, 3J74|1|5|G|2124, 3J74|1|5|C|2248, 3J74|1|5|C|2249, 3J74|1|5|C|2256, 3J74|1|5|G|2259, 3J74|1|5|C|2260, 3J74|1|5|U|2267, 3J74|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J74|1|5|C|2087
3J74|1|5|A|2088
3J74|1|5|G|2089
3J74|1|5|U|2090
3J74|1|5|C|2091
3J74|1|5|G|2092
3J74|1|5|A|2093
3J74|1|5|G|2094
3J74|1|5|A|2095
3J74|1|5|G|2096
3J74|1|5|U|2097
3J74|1|5|G|2098
3J74|1|5|G|2099
3J74|1|5|A|2100
3J74|1|5|C|2101
3J74|1|5|G|2102
3J74|1|5|G|2103
3J74|1|5|G|2104
3J74|1|5|A|2105
3J74|1|5|G|2106
3J74|1|5|C|2107
3J74|1|5|G|2108
3J74|1|5|G|2109
3J74|1|5|C|2110
3J74|1|5|G|2111
3J74|1|5|G|2112
3J74|1|5|G|2113
3J74|1|5|G|2114
3J74|1|5|G|2115
3J74|1|5|C|2116
3J74|1|5|G|2117
3J74|1|5|G|2118
3J74|1|5|C|2119
3J74|1|5|G|2120
3J74|1|5|C|2121
3J74|1|5|G|2122
3J74|1|5|C|2123
3J74|1|5|G|2124
3J74|1|5|C|2125
3J74|1|5|G|2126
3J74|1|5|C|2127
3J74|1|5|G|2128
*
3J74|1|5|C|2246
3J74|1|5|C|2247
3J74|1|5|C|2248
3J74|1|5|C|2249
3J74|1|5|C|2250
3J74|1|5|G|2251
3J74|1|5|G|2252
3J74|1|5|A|2253
3J74|1|5|G|2254
3J74|1|5|C|2255
3J74|1|5|C|2256
3J74|1|5|C|2257
3J74|1|5|C|2258
3J74|1|5|G|2259
3J74|1|5|C|2260
3J74|1|5|G|2261
3J74|1|5|G|2262
3J74|1|5|A|2263
3J74|1|5|C|2264
3J74|1|5|G|2265
3J74|1|5|C|2266
3J74|1|5|U|2267
3J74|1|5|A|2268
3J74|1|5|C|2269
3J74|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain E

Ribosomal protein eL6

Chain F

Ribosomal protein uL30

Chain Q

Ribosomal protein eL18

Chain r

Ribosomal protein eL28