IL_3J74_213

3D structure

PDB id

3J74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J74_213 not in the Motif Atlas

Geometric match to IL_5F5F_001

Geometric discrepancy: 0.2199

The information below is about IL_5F5F_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

3J74|1|S2|G|437
3J74|1|S2|G|438
3J74|1|S2|A|439
*
3J74|1|S2|U|454
3J74|1|S2|A|455
3J74|1|S2|C|456

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8