IL_3J77_010
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_010 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.3084
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
3J77|1|1S|U|117
3J77|1|1S|U|118
3J77|1|1S|A|119
3J77|1|1S|U|120
3J77|1|1S|U|121
3J77|1|1S|U|122
*
3J77|1|1S|A|295
3J77|1|1S|U|296
3J77|1|1S|U|297
3J77|1|1S|C|298
3J77|1|1S|A|299
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain S4
- 40S ribosomal protein S4
- Chain S8
- 40S ribosomal protein S8
Coloring options: