IL_3J77_018

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

3J77|1|1S|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_018 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.3397

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

3J77|1|1S|G|274
3J77|1|1S|C|275
3J77|1|1S|C|276
*
3J77|1|1S|G|279
3J77|1|1S|U|280
3J77|1|1S|G|281
3J77|1|1S|C|282

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 74

60S ribosomal protein L24

Chain S6

40S ribosomal protein S6