IL_3J77_020

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

3J77|1|1S|U|320, 3J77|1|1S|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_020 not in the Motif Atlas

Homologous match to IL_4V88_403

Geometric discrepancy: 0.4835

The information below is about IL_4V88_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85724.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

3J77|1|1S|U|318
3J77|1|1S|U|319
3J77|1|1S|U|320
3J77|1|1S|C|321
3J77|1|1S|G|322
3J77|1|1S|A|323
*
3J77|1|1S|U|345
3J77|1|1S|G|346

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain S8

40S ribosomal protein S8