IL_3J77_042

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

3J77|1|1S|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_042 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2201

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J77|1|1S|G|868
3J77|1|1S|A|869
*
3J77|1|1S|U|958
3J77|1|1S|U|959
3J77|1|1S|U|960

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 13

40S ribosomal protein S13

Chain 27

40S ribosomal protein S27