IL_3J77_048

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_048 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.1618

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3J77|1|1S|G|985
3J77|1|1S|G|986
3J77|1|1S|G|987
3J77|1|1S|A|988
3J77|1|1S|U|989
3J77|1|1S|C|990
*
3J77|1|1S|G|1014
3J77|1|1S|U|1015
3J77|1|1S|C|1016

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 14

40S ribosomal protein S14

Chain 26

40S ribosomal protein S26

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 93

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2