IL_3J77_055

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CGGA*UUG

Length

7 nucleotides

Bulged bases

3J77|1|1S|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_055 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.2325

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J77|1|1S|C|1148
3J77|1|1S|G|1149
3J77|1|1S|G|1150
3J77|1|1S|A|1151
*
3J77|1|1S|U|1627
3J77|1|1S|U|1628
3J77|1|1S|G|1629

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 26

40S ribosomal protein S26

Chain MR

messenger RNA

Chain S2

40S ribosomal protein S2