IL_3J77_056

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

3J77|1|1S|C|1158, 3J77|1|1S|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J77|1|1S|C|1156
3J77|1|1S|A|1157
3J77|1|1S|C|1158
3J77|1|1S|C|1159
3J77|1|1S|A|1160
*
3J77|1|1S|U|1617
3J77|1|1S|C|1618
3J77|1|1S|C|1619
3J77|1|1S|C|1620
3J77|1|1S|U|1621
3J77|1|1S|G|1622

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 16

40S ribosomal protein S16

Chain 28

40S ribosomal protein S28

Chain MR

messenger RNA

Chain PT

Transfer RNA; tRNA

Chain S5

40S ribosomal protein S5