3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J77_068 not in the Motif Atlas
Geometric match to IL_5TBW_039
Geometric discrepancy: 0.2446
The information below is about IL_5TBW_039
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

3J77|1|1S|C|1306
3J77|1|1S|U|1307
3J77|1|1S|G|1308
*
3J77|1|1S|C|1317
3J77|1|1S|G|1318

Current chains

Chain 1S
18S ribosomal RNA

Nearby chains

Chain 17
40S ribosomal protein S17

Coloring options:


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