IL_3J77_076

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_076 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2065

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J77|1|1S|G|1540
3J77|1|1S|G|1541
3J77|1|1S|G|1542
3J77|1|1S|A|1543
3J77|1|1S|U|1544
3J77|1|1S|A|1545
*
3J77|1|1S|U|1566
3J77|1|1S|U|1567
3J77|1|1S|C|1568
3J77|1|1S|A|1569
3J77|1|1S|A|1570
3J77|1|1S|C|1571

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 18

40S ribosomal protein S18

Chain 19

40S ribosomal protein S19