IL_3J77_084

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_084 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.2206

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J77|1|1S|U|1665
3J77|1|1S|U|1666
3J77|1|1S|A|1667
*
3J77|1|1S|U|1734
3J77|1|1S|U|1735
3J77|1|1S|G|1736

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 73

60S ribosomal protein L23

Chain S8

40S ribosomal protein S8