IL_3J77_085
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_085 not in the Motif Atlas
- Geometric match to IL_7RQB_089
- Geometric discrepancy: 0.1978
- The information below is about IL_7RQB_089
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.10
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 33
Unit IDs
3J77|1|1S|U|1669
3J77|1|1S|G|1670
3J77|1|1S|A|1671
3J77|1|1S|G|1672
*
3J77|1|1S|C|1729
3J77|1|1S|A|1730
3J77|1|1S|A|1731
3J77|1|1S|A|1732
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 73
- 60S ribosomal protein L23
- Chain 74
- 60S ribosomal protein L24
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
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