IL_3J77_092
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 3J77|1|2S|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_092 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.1445
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J77|1|2S|C|31
3J77|1|2S|U|32
3J77|1|2S|G|33
3J77|1|2S|A|34
3J77|1|2S|A|35
3J77|1|2S|C|36
3J77|1|2S|U|37
3J77|1|2S|U|38
*
3J77|1|2S|A|45
3J77|1|2S|U|46
3J77|1|2S|C|47
3J77|1|2S|A|48
3J77|1|2S|A|49
3J77|1|2S|U|50
3J77|1|2S|A|51
3J77|1|2S|A|52
3J77|1|2S|G|53
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L13
- Chain 65
- 60S ribosomal protein L15
- Chain 78
- 60S ribosomal protein L28
- Chain 87
- 60S ribosomal protein L37
- Chain 92
- 60S ribosomal protein L42
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