IL_3J77_102
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_102 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.1905
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J77|1|2S|G|404
3J77|1|2S|U|405
3J77|1|2S|G|406
3J77|1|2S|A|407
3J77|1|2S|A|408
3J77|1|2S|A|409
3J77|1|2S|U|410
*
3J77|1|8S|A|13
3J77|1|8S|C|14
3J77|1|8S|G|15
3J77|1|8S|G|16
3J77|1|8S|A|17
3J77|1|8S|U|18
3J77|1|8S|C|19
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 82
- 60S ribosomal protein L32
- Chain L4
- 60S ribosomal protein L4
Coloring options: